PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01288.20
Common NameJCGZ_16108, LOC105630926
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 158aa    MW: 17868.8 Da    PI: 9.1051
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01288.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57.1e-183281255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Jcr4S01288.20 32 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPIAAARAYDTAVFYLRG 81
                   69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.45E-213290IPR016177DNA-binding domain
SMARTSM003809.5E-353295IPR001471AP2/ERF domain
PROSITE profilePS5103222.1943289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-303390IPR001471AP2/ERF domain
PfamPF008472.3E-113381IPR001471AP2/ERF domain
CDDcd000185.62E-273391No hitNo description
PRINTSPR003677.1E-123344IPR001471AP2/ERF domain
PRINTSPR003677.1E-127191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0010200Biological Processresponse to chitin
GO:0010941Biological Processregulation of cell death
GO:0042538Biological Processhyperosmotic salinity response
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEAGECCSST SPSTSTPTSA EKRKHRQQQE KPYRGIRMRK WGKWVAEIRE PNKRSRIWLG  60
SYSTPIAAAR AYDTAVFYLR GPSARLNFPD LIFRDDEQTR DMSAASIRKK ATEVGAQVDA  120
LQQTAPHSHA SDQNSNRVVV SEKPDLNQYP NPENSDEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-152989263ATERF1
2gcc_A2e-152989263ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00401DAPTransfer from AT3G50260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068309.11e-116PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ9SNE12e-54ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A067KZU71e-116A0A067KZU7_JATCU; Uncharacterized protein
STRINGPOPTR_0014s02530.14e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.12e-55cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]